PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011730-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 92aa    MW: 10214.3 Da    PI: 8.9317
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011730-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.5e-101356344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a +++ ++   +W  +a+ +g g++++++k ++
    NNU_011730-RA 13 TWTPKQNKLFEKALALYDKDtpdRWQNVAKAVG-GKSAEEVKRHY 56
                     7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.69964IPR017884SANT domain
SMARTSM007171.7E-81062IPR001005SANT/Myb domain
SuperFamilySSF466895.77E-131268IPR009057Homeodomain-like
PfamPF002494.8E-81356IPR001005SANT/Myb domain
CDDcd001672.07E-61356No hitNo description
Gene3DG3DSA:1.10.10.604.4E-51366IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASSSLRGSS SSTWTPKQNK LFEKALALYD KDTPDRWQNV AKAVGGKSAE EVKRHYEILI  60
EDLKHIESGK VPFPNYKSSG SSSQGIGDEE QR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-35484281RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263639.11e-62PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-40RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLD7TQ272e-47D7TQ27_VITVI; Putative uncharacterized protein
STRINGVIT_03s0063g02670.t015e-47(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.19e-40RAD-like 6